Stem-loop abu-mir-27c

Accession

MI0033989

Description

Astatotilapia burtoni abu-mir-27c precursor miRNA

Literature search

1 open access papers mention abu-mir-27c
(1 sentences)

Sequence

11022 reads, 3480.0 reads per million, 1 experiments

CAGGACUUAACCCACAUGUGAACAgugagugucugccaugUUCACAGUGGUUAAGUUCUGCC
((((((((((((.((.((((((((.((.((....))))))))))))))))))))))))))..

Structure

--            C  A        g  a  g 
  CAGGACUUAACC AC UGUGAACA ug gu u
  |||||||||||| || |||||||| || ||  
  GUCUUGAAUUGG UG ACACUUgu ac cg c
CC            -  -        -  -  u 

Annotation confidence High

Genome context

JH425895.1: 119545-119606 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-27c

Mature abu-miR-27c-5p

• Accession: MIMAT0059888
• Description: Astatotilapia burtoni abu-miR-27c-5p mature miRNA
• Sequence: 1 - CAGGACUUAACCCACAUGUGAACA - 24
• Evidence: experimental ; Illumina [1]

Mature abu-miR-27c-3p

• Accession: MIMAT0042255
• Description: Astatotilapia burtoni abu-miR-27c-3p mature miRNA
• Sequence: 41 - UUCACAGUGGUUAAGUUCUGCC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381