miRBase entry: abu-mir-16c

Stem-loop abu-mir-16c

Accession

MI0033998

Description

Astatotilapia burtoni abu-mir-16c precursor miRNA

Sequence

AAGCAGCACAUAACAUACUGGUAaugcagugaaaaauaccaguaaugaugugcugcuacg
.((((((((((....((((((((.............))))))))...))))))))))...

Structure

--A          AACA        augca 
   AGCAGCACAU    UACUGGUA     g
   ||||||||||    ||||||||     u
   ucgucgugua    augaccau     g
gca          -gua        aaaaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH425774.1: 57025-57084 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-16c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-16c

Accession	MIMAT0042263
Description	Astatotilapia burtoni abu-miR-16c mature miRNA
Sequence	1 - AAGCAGCACAUAACAUACUGGUA - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381