Stem-loop mze-let-7a-6

Accession

MI0034044

Description

Metriaclima zebra mze-let-7a-6 precursor miRNA

Sequence

294034 reads, 11929.0 reads per million, 7 experiments

UGAGGUAGUAGGUUGUAUAGUUugugggauggacucaauccuauucaggugauaacuaUACAGCCUAUUACCUUCCUUGa
.(((((((((((((((((((((.(((((((.......))))))).........)))))))))))))))))))))......

Structure

-----U                     --------u       gg 
      GAGGUAGUAGGUUGUAUAGUU         gugggau  a
      |||||||||||||||||||||         |||||||  c
      UUCCAUUAUCCGACAUaucaa         uauccua  u
aGUUCC                     uaguggacu       ac 

Annotation confidence Medium

Genome context

AGTA03000042.1: 3884127-3884206 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-let-7a-6

Mature mze-let-7a-5p

• Accession: MIMAT0042291
• Description: Metriaclima zebra mze-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature mze-let-7a-6-3p

• Accession: MIMAT0059920
• Description: Metriaclima zebra mze-let-7a-6-3p mature miRNA
• Sequence: 59 - UACAGCCUAUUACCUUCCUUG - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381