Stem-loop mze-mir-462

Accession

MI0034049

Description

Metriaclima zebra mze-mir-462 precursor miRNA

Sequence

18747 reads, 1508.0 reads per million, 7 experiments

UAACGGAACCCAUAAUGCAGCUGugauucugagccccaGCUGGUUAUGGGGUCCGUUUC
.((((((.((((((((.((((((.(..........))))))))))))))).))))))..

Structure

-U      A        G      u auuc 
  AACGGA CCCAUAAU CAGCUG g    u
  |||||| |||||||| |||||| |     
  UUGCCU GGGUAUUG GUCGac c    g
CU      G        -      - ccga 

Annotation confidence High

Genome context

AGTA03000067.1: 793590-793648 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-462

Mature mze-miR-462-5p

• Accession: MIMAT0042293
• Description: Metriaclima zebra mze-miR-462-5p mature miRNA
• Sequence: 1 - UAACGGAACCCAUAAUGCAGCUG - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-462-3p

• Accession: MIMAT0059922
• Description: Metriaclima zebra mze-miR-462-3p mature miRNA
• Sequence: 39 - GCUGGUUAUGGGGUCCGUUUC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381