Stem-loop mze-mir-221-1

Accession

MI0034081

Description

Metriaclima zebra mze-mir-221-1 precursor miRNA

Sequence

57822 reads, 2057.0 reads per million, 7 experiments

ACCUGGCAUACAAUGUAGAUUUCUGUgugguucaauucuacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....(((((.((......)))))))))))))))).))))))))...

Structure

---        U         AUUU     u  uu 
   ACCUGGCA ACAAUGUAG    CUGUg gg  c
   |||||||| |||||||||    ||||| ||   
   UGGGUCGU UGUUACAUC    GAcau cu  a
CUU        C         ----     -  ua 

Annotation confidence High

Genome context

AGTA03000213.1: 206082-206145 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-221-1

Mature mze-miR-221-1-5p

• Accession: MIMAT0059950
• Description: Metriaclima zebra mze-miR-221-1-5p mature miRNA
• Sequence: 1 - ACCUGGCAUACAAUGUAGAUUUCUGU - 26
• Evidence: experimental ; Illumina [1]

Mature mze-miR-221-3p

• Accession: MIMAT0042316
• Description: Metriaclima zebra mze-miR-221-3p mature miRNA
• Sequence: 42 - AGCUACAUUGUCUGCUGGGUUUC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381