Stem-loop mze-mir-130-1

Accession

MI0034103

Description

Metriaclima zebra mze-mir-130-1 precursor miRNA

Sequence

11896 reads, 499.0 reads per million, 7 experiments

GCCCUUUUUCUGUUGCACUACUggacacugagaugagCAGUGCAAUAUUAAAAGGGCA
((((((((..(((((((((.((.............)).)))))))))..)))))))).

Structure

-        UC         A  ggaca 
 GCCCUUUU  UGUUGCACU CU     c
 ||||||||  ||||||||| ||     u
 CGGGAAAA  AUAACGUGA ga     g
A        UU         C  guaga 

Annotation confidence High

Genome context

AGTA03000002.1: 7169433-7169490 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-130-1

Mature mze-miR-130-1-5p

• Accession: MIMAT0059970
• Description: Metriaclima zebra mze-miR-130-1-5p mature miRNA
• Sequence: 1 - GCCCUUUUUCUGUUGCACUACU - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-130-3p

• Accession: MIMAT0042333
• Description: Metriaclima zebra mze-miR-130-3p mature miRNA
• Sequence: 38 - CAGUGCAAUAUUAAAAGGGCA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381