Stem-loop mze-mir-200b

Accession

MI0034106

Description

Metriaclima zebra mze-mir-200b precursor miRNA

Sequence

89421 reads, 3093.0 reads per million, 7 experiments

CAUCUUACGAGGCAGCAUUGGAuaucaucacuuucucUAAUACUGCCUGGUAAUGAUGAU
((((((((.((((((.((((((.............)))))).)))))).)))).))))..

Structure

--    -    G      C      uauca 
  CAUC UUAC AGGCAG AUUGGA     u
  |||| |||| |||||| ||||||     c
  GUAG AAUG UCCGUC UAAUcu     a
UA    U    G      A      cuuuc 

Annotation confidence High

Genome context

AGTA03000309.1: 1060253-1060312 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-200b

Mature mze-miR-200b-5p

• Accession: MIMAT0059972
• Description: Metriaclima zebra mze-miR-200b-5p mature miRNA
• Sequence: 1 - CAUCUUACGAGGCAGCAUUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-200b-3p

• Accession: MIMAT0042335
• Description: Metriaclima zebra mze-miR-200b-3p mature miRNA
• Sequence: 38 - UAAUACUGCCUGGUAAUGAUGAU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381