Stem-loop mze-mir-142-1

Accession

MI0034109

Description

Metriaclima zebra mze-mir-142-1 precursor miRNA

Sequence

1481 reads, 146.0 reads per million, 7 experiments

CAUAAAGUAGAAAGCACUACUaaacuccucgccacaguguAGUGUUUCCUACUUUAUGGAUG
((((((((((.(((((((((..................))))))))).))))))))))....

Structure

----          A         Uaaacucc 
    CAUAAAGUAG AAGCACUAC        u
    |||||||||| |||||||||         
    GUAUUUCAUC UUUGUGAug        c
GUAG          C         ugacaccg 

Annotation confidence Medium

Genome context

AGTA03000099.1: 3687654-3687715 [+]

Mature mze-miR-142-5p

• Accession: MIMAT0042338
• Description: Metriaclima zebra mze-miR-142-5p mature miRNA
• Sequence: 1 - CAUAAAGUAGAAAGCACUACU - 21
• Evidence: experimental ; Illumina [1]

Mature mze-miR-142-3p

• Accession: MIMAT0059975
• Description: Metriaclima zebra mze-miR-142-3p mature miRNA
• Sequence: 41 - AGUGUUUCCUACUUUAUGGAUG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381