Stem-loop mze-mir-731

Accession

MI0034114

Description

Metriaclima zebra mze-mir-731 precursor miRNA

Sequence

38005 reads, 1307.0 reads per million, 7 experiments

AAUGACACGUUUUCUCCCGGAUUgcugugagcaggaaacgcAACCGGGAAUUUCGUGUCAGCCA
..(((((((.....((((((.((((.((.........))))))))))))....)))))))....

Structure

--AA       UUUUC      A    u  gag 
    UGACACG     UCCCGG UUgc gu   c
    |||||||     |||||| |||| ||   a
    ACUGUGC     AGGGCC AAcg ca   g
ACCG       -UUUA      -    -  aag 

Annotation confidence High

Genome context

AGTA03000067.1: 794089-794152 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-731

Mature mze-miR-731-5p

• Accession: MIMAT0042342
• Description: Metriaclima zebra mze-miR-731-5p mature miRNA
• Sequence: 1 - AAUGACACGUUUUCUCCCGGAUU - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-731-3p

• Accession: MIMAT0059978
• Description: Metriaclima zebra mze-miR-731-3p mature miRNA
• Sequence: 42 - AACCGGGAAUUUCGUGUCAGCCA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381