Stem-loop mze-mir-200a

Accession

MI0034115

Description

Metriaclima zebra mze-mir-200a precursor miRNA

Sequence

59900 reads, 1956.0 reads per million, 7 experiments

CAUCUUACCUGACAGUGCUGGAcuguacuacuguuguucUAACACUGUCUGGUAACGAUGUU
(((((((((.(((((((.((((....((....))...)))).))))))).))))).))))..

Structure

--    -     U       C    cugu  u 
  CAUC UUACC GACAGUG UGGA    ac a
  |||| ||||| ||||||| ||||    ||  
  GUAG AAUGG CUGUCAC AUcu    ug c
UU    C     U       A    -ugu  u 

Annotation confidence High

Genome context

AGTA03000309.1: 1060065-1060126 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-200a

Mature mze-miR-200a-5p

• Accession: MIMAT0059979
• Description: Metriaclima zebra mze-miR-200a-5p mature miRNA
• Sequence: 1 - CAUCUUACCUGACAGUGCUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-200a-3p

• Accession: MIMAT0042343
• Description: Metriaclima zebra mze-miR-200a-3p mature miRNA
• Sequence: 40 - UAACACUGUCUGGUAACGAUGUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381