Stem-loop mze-mir-23b

Accession

MI0034126

Description

Metriaclima zebra mze-mir-23b precursor miRNA

Sequence

16899 reads, 657.0 reads per million, 7 experiments

aGGGUUCCUGGCGUGCUGAUUUgugacuuaugauaaaAUCACAUUGCCAGGGAUUACC
..(((((((((((((.((((((.............)))))))).)))))))))))...

Structure

-aG           -  C      gugac 
   GGUUCCUGGCG UG UGAUUU     u
   ||||||||||| || ||||||     u
   UUAGGGACCGU AC ACUAaa     a
CCA           U  -      auagu 

Annotation confidence High

Genome context

AGTA03000056.1: 3235823-3235880 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-23b

Mature mze-miR-23b-5p

• Accession: MIMAT0059986
• Description: Metriaclima zebra mze-miR-23b-5p mature miRNA
• Sequence: 2 - GGGUUCCUGGCGUGCUGAUUU - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-23b-3p

• Accession: MIMAT0042354
• Description: Metriaclima zebra mze-miR-23b-3p mature miRNA
• Sequence: 38 - AUCACAUUGCCAGGGAUUACC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381