Stem-loop mze-mir-19d

Accession

MI0034129

Description

Metriaclima zebra mze-mir-19d precursor miRNA

Sequence

2678 reads, 148.0 reads per million, 7 experiments

AGCUUUGCAGGGUGGGCAGUCAGCcugugugcauaaggaccagcUGUGCAAACCCAUGCAAAACUG
((.((((((((((..(((..((((.((.((.(....).)))))))))))..)))).)))))).)).

Structure

-  C      -    GG   GU    c  u  g a 
 AG UUUGCA GGGU  GCA  CAGC ug gu c u
 || |||||| ||||  |||  |||| || || |  
 UC AAACGU CCCA  CGU  GUcg ac ca g a
G  A      A    AA   --    -  -  g a 

Annotation confidence High

Genome context

AGTA03000037.1: 128692-128757 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from mze-mir-19d

Mature mze-miR-19d-5p

• Accession: MIMAT0059989
• Description: Metriaclima zebra mze-miR-19d-5p mature miRNA
• Sequence: 1 - AGCUUUGCAGGGUGGGCAGUCAGC - 24
• Evidence: experimental ; Illumina [1]

Mature mze-miR-19d-3p

• Accession: MIMAT0042356
• Description: Metriaclima zebra mze-miR-19d-3p mature miRNA
• Sequence: 45 - UGUGCAAACCCAUGCAAAACUG - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381