Stem-loop mze-mir-20a-1

Accession

MI0034131

Description

Metriaclima zebra mze-mir-20a-1 precursor miRNA

Sequence

12271 reads, 457.0 reads per million, 7 experiments

UAAAGUGCUUAUAGUGCAGGUAGuguuuugcacaaucuACUGCAAUGUAAGCACUUGAAGU
..(((((((((((.(((((...((((...))))......))))).))))))))))).....

Structure

---UA           G     ---GUA    u 
     AAGUGCUUAUA UGCAG      Gugu  
     ||||||||||| |||||      |||| u
     UUCACGAAUGU ACGUC      cacg  
UGAAG           A     Aucuaa    u 

Annotation confidence High

Genome context

AGTA03000036.1: 4187837-4187897 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-20a-1

Mature mze-miR-20a-5p

• Accession: MIMAT0042358
• Description: Metriaclima zebra mze-miR-20a-5p mature miRNA
• Sequence: 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-20a-1-3p

• Accession: MIMAT0059991
• Description: Metriaclima zebra mze-miR-20a-1-3p mature miRNA
• Sequence: 39 - ACUGCAAUGUAAGCACUUGAAGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381