Stem-loop mze-mir-20a-2

Accession

MI0034132

Description

Metriaclima zebra mze-mir-20a-2 precursor miRNA

Sequence

11839 reads, 415.0 reads per million, 7 experiments

UAAAGUGCUUAUAGUGCAGGUAGucuucuuacuguuuaaauucuACUGCAAUGUGAGCACUUCAAGU
..(((((((((((.(((((.(((...................)))))))).))))))))))).....

Structure

---UA           G     G   ucuucuua 
     AAGUGCUUAUA UGCAG UAG        c
     ||||||||||| ||||| |||        u
     UUCACGAGUGU ACGUC Auc        g
UGAAC           A     -   uuaaauuu 

Annotation confidence High

Genome context

AGTA03000134.1: 1275788-1275854 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from mze-mir-20a-2

Mature mze-miR-20a-5p

• Accession: MIMAT0042358
• Description: Metriaclima zebra mze-miR-20a-5p mature miRNA
• Sequence: 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-20a-2-3p

• Accession: MIMAT0059992
• Description: Metriaclima zebra mze-miR-20a-2-3p mature miRNA
• Sequence: 45 - ACUGCAAUGUGAGCACUUCAAGU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381