Stem-loop mze-mir-338-3

Accession

MI0034135

Description

Metriaclima zebra mze-mir-338-3 precursor miRNA

Sequence

3716 reads, 219.0 reads per million, 7 experiments

AACAAUAUCCUGGUGCUGCCUGAGUgcucccuaaagacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((.((......))))))))))))))).))).))))).

Structure

-     U   -         CCU    g  cc 
 AACAA AUC CUGGUGCUG   GAGU cu  c
 ||||| ||| |||||||||   |||| ||   
 UUGUU UAG GACUACGAC   CUca ga  u
G     U   U         ---    -  aa 

Annotation confidence High

Genome context

AGTA03000218.1: 164363-164422 [-]

Mature mze-miR-338-3-5p

• Accession: MIMAT0059995
• Description: Metriaclima zebra mze-miR-338-3-5p mature miRNA
• Sequence: 1 - AACAAUAUCCUGGUGCUGCCUGAGU - 25
• Evidence: experimental ; Illumina [1]

Mature mze-miR-338-3p

• Accession: MIMAT0042360
• Description: Metriaclima zebra mze-miR-338-3p mature miRNA
• Sequence: 39 - UCCAGCAUCAGUGAUUUUGUUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381