miRBase entry: mze-mir-18a

Stem-loop mze-mir-18a


Accession
MI0034141
Description
Metriaclima zebra mze-mir-18a precursor miRNA


Sequence

12970 reads, 438.0 reads per million, 7 experiments
UAAGGUGCAUCUAGUGCAGAUAgugaaguagacuagcaccuACUGCCCUAAGUGCUCCUUCU
.((((.((((.(((.((((.(((((...........)).))))))).))).)))).))))..

Structure
-U    U    C   U    A   -  aagu 
  AAGG GCAU UAG GCAG UAg ug    a
  |||| |||| ||| |||| ||| ||    g
  UUCC CGUG AUC CGUC Auc ac    a
UC    U    A   C    -   c  gauc 


Annotation confidence High
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Genome context
AGTA03000134.1: 1275426-1275487 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from mze-mir-18a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-18a-5p

Accession MIMAT0042362
Description Metriaclima zebra mze-miR-18a-5p mature miRNA
Sequence 1 - UAAGGUGCAUCUAGUGCAGAUA - 22
Evidence experimental
Illumina [1]

Mature mze-miR-18a-3p

Accession MIMAT0059998
Description Metriaclima zebra mze-miR-18a-3p mature miRNA
Sequence 42 - ACUGCCCUAAGUGCUCCUUCU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381