miRBase entry: mze-mir-24a-2

Stem-loop mze-mir-24a-2


Accession
MI0034150
Description
Metriaclima zebra mze-mir-24a-2 precursor miRNA


Sequence

25381 reads, 858.0 reads per million, 7 experiments
UGCCUGCUGUGCUGAUAAUCAGUgugugacgucggcUGGCUCAGUUCAGCAGGAAC
..(((((((.(((((...(((((...........))))).))))).)))))))...

Structure
-UG       U     UAA     gugu 
   CCUGCUG GCUGA   UCAGU    g
   ||||||| |||||   |||||    a
   GGACGAC UGACU   GGUcg    c
CAA       U     --C     gcug 


Annotation confidence High
Do you think this miRNA is real?

Genome context
AGTA03000104.1: 2537295-2537350 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-24a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-24a-2-5p

Accession MIMAT0060004
Description Metriaclima zebra mze-miR-24a-2-5p mature miRNA
Sequence 1 - UGCCUGCUGUGCUGAUAAUCAGU - 23
Evidence experimental
Illumina [1]

Mature mze-miR-24a-3p

Accession MIMAT0042369
Description Metriaclima zebra mze-miR-24a-3p mature miRNA
Sequence 37 - UGGCUCAGUUCAGCAGGAAC - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381