Stem-loop mze-mir-365

Accession

MI0034169

Description

Metriaclima zebra mze-mir-365 precursor miRNA

Sequence

1837 reads, 69.0 reads per million, 7 experiments

AGGGACUUUUAGGGGCAGCUGUGuuuuauuaacccagucaUAAUGCCCCUAAAAAUCCUUAU
(((((.(((((((((((((((.(((.....))).)))).....))))))))))).)))))..

Structure

--     C           -----    U   u 
  AGGGA UUUUAGGGGCA     GCUG Guu u
  ||||| |||||||||||     |||| ||| a
  UUCCU AAAAUCCCCGU     ugac caa u
UA     A           AAUac    c   u 

Annotation confidence High

Genome context

AGTA03000004.1: 482598-482659 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-365

Mature mze-miR-365-5p

• Accession: MIMAT0060019
• Description: Metriaclima zebra mze-miR-365-5p mature miRNA
• Sequence: 1 - AGGGACUUUUAGGGGCAGCUGUG - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-365-3p

• Accession: MIMAT0042384
• Description: Metriaclima zebra mze-miR-365-3p mature miRNA
• Sequence: 41 - UAAUGCCCCUAAAAAUCCUUAU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381