Stem-loop mze-mir-219a-1

Accession

MI0034177

Description

Metriaclima zebra mze-mir-219a-1 precursor miRNA

Sequence

1578 reads, 58.0 reads per million, 7 experiments

UGAUUGUCCAAACGCAAUUCUUGcaugugcuuuugugaaaccaGGAGUUGUGGAUGGACAUCAC
((((.(((((..(((((((((((....(((....)))....)))))))))))..))))))))).

Structure

-    U     AA           caug   u 
 UGAU GUCCA  CGCAAUUCUUG    ugc u
 |||| |||||  |||||||||||    |||  
 ACUA CAGGU  GUGUUGAGGac    gug u
C    -     AG           caaa   u 

Annotation confidence High

Genome context

AGTA03000467.1: 247636-247699 [-]

Mature mze-miR-219a-5p

• Accession: MIMAT0042393
• Description: Metriaclima zebra mze-miR-219a-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUUG - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-219a-1-3p

• Accession: MIMAT0060026
• Description: Metriaclima zebra mze-miR-219a-1-3p mature miRNA
• Sequence: 44 - GGAGUUGUGGAUGGACAUCAC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381