Stem-loop mze-mir-29a-2

Accession

MI0034197

Description

Metriaclima zebra mze-mir-29a-2 precursor miRNA

Sequence

36 reads, 3.0 reads per million, 7 experiments

acCGAUUUCUUUCGGUGUUCAGAGucugcuucuguuucUAGCACCAUUUGAAAUCGGUUA
(((((((((....((((((.((((...((....))))))))))))....)))))))))..

Structure

--         UUUC      C    ucu  u 
  acCGAUUUC    GGUGUU AGAG   gc u
  |||||||||    |||||| ||||   ||  
  UGGCUAAAG    CCACGA Ucuu   ug c
AU         UUUA      -    ---  u 

Annotation confidence Not enough data

Genome context

AGTA03000066.1: 815804-815863 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-29a-2

Mature mze-miR-29a-2-5p

• Accession: MIMAT0060025
• Description: Metriaclima zebra mze-miR-29a-2-5p mature miRNA
• Sequence: 3 - CGAUUUCUUUCGGUGUUCAGAG - 24
• Evidence: experimental ; Illumina [1]

Mature mze-miR-29a-3p

• Accession: MIMAT0042392
• Description: Metriaclima zebra mze-miR-29a-3p mature miRNA
• Sequence: 39 - UAGCACCAUUUGAAAUCGGUUA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381