Stem-loop mze-mir-23c

Accession

MI0034211

Description

Metriaclima zebra mze-mir-23c precursor miRNA

Sequence

9136 reads, 384.0 reads per million, 7 experiments

UGUGUCUCUGGCAAGAUGAUUUgggccacaaaguugaaAUCACAUUGCCAGAGAUUACUG
.(((((((((((((..((((((.(((......))).))))))..)))))))))).)))..

Structure

-U   -          GA      g   ca 
  GUG UCUCUGGCAA  UGAUUU ggc  c
  ||| ||||||||||  |||||| |||   
  CAU AGAGACCGUU  ACUAaa uug  a
GU   U          AC      g   aa 

Annotation confidence High

Genome context

AGTA03000062.1: 2305399-2305458 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-23c

Mature mze-miR-23c-5p

• Accession: MIMAT0060039
• Description: Metriaclima zebra mze-miR-23c-5p mature miRNA
• Sequence: 1 - UGUGUCUCUGGCAAGAUGAUUU - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-23c-3p

• Accession: MIMAT0042407
• Description: Metriaclima zebra mze-miR-23c-3p mature miRNA
• Sequence: 39 - AUCACAUUGCCAGAGAUUACUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381