Stem-loop mze-mir-551

Accession

MI0034228

Description

Metriaclima zebra mze-mir-551 precursor miRNA

Sequence

4201 reads, 147.0 reads per million, 7 experiments

GAAACCAAGUGUGGGUGUGGCCUgaaaaagaaauaugGCGACCCAUCCUUUGUUUCUG
(((((.(((.((((((...(((..............))).)))))).))).)))))..

Structure

--     C   U      GUG   Ugaaaa 
  GAAAC AAG GUGGGU   GCC      a
  ||||| ||| ||||||   |||       
  CUUUG UUC UACCCA   CGg      g
GU     U   C      --G   uauaaa 

Annotation confidence High

Genome context

AGTA03000100.1: 1266526-1266583 [+]

Mature mze-miR-551-5p

• Accession: MIMAT0060053
• Description: Metriaclima zebra mze-miR-551-5p mature miRNA
• Sequence: 1 - GAAACCAAGUGUGGGUGUGGCCU - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-551-3p

• Accession: MIMAT0042422
• Description: Metriaclima zebra mze-miR-551-3p mature miRNA
• Sequence: 38 - GCGACCCAUCCUUUGUUUCUG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381