Stem-loop mze-mir-10d

Accession

MI0034235

Description

Metriaclima zebra mze-mir-10d precursor miRNA

Sequence

119342 reads, 5169.0 reads per million, 7 experiments

CACCCUGUAGAUCCGAAUUUGUguaaauacagcagcagccaCAAAUUCGCAUCUUGGGGAGU
..(((((.((((.((((((((((........((....)))))))))))).)))))))))...

Structure

-CA     U    C          uaaauaca  a 
   CCCUG AGAU CGAAUUUGUg        gc g
   ||||| |||| ||||||||||        ||  
   GGGGU UCUA GCUUAAACac        cg c
UGA     -    C          --------  a 

Annotation confidence High

Genome context

AGTA03000218.1: 2112236-2112297 [+]

Mature mze-miR-10d-5p

• Accession: MIMAT0042429
• Description: Metriaclima zebra mze-miR-10d-5p mature miRNA
• Sequence: 1 - CACCCUGUAGAUCCGAAUUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-10d-3p

• Accession: MIMAT0060056
• Description: Metriaclima zebra mze-miR-10d-3p mature miRNA
• Sequence: 42 - CAAAUUCGCAUCUUGGGGAGU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381