miRBase entry: mze-mir-449a

Stem-loop mze-mir-449a


Accession
MI0034252
Description
Metriaclima zebra mze-mir-449a precursor miRNA


Sequence

141 reads, 6.0 reads per million, 7 experiments
AGGCAGUGUCUUGUUAGCUGGUaguuucuuccugugcCAGCUCACCUGCUGCUGCCCU
.(((((((.(..((.((((((((...........)))))))).))..).)))))))..

Structure
-A       U UU  U        guuu 
  GGCAGUG C  GU AGCUGGUa    c
  ||||||| |  || ||||||||    u
  CCGUCGU G  CA UCGACcgu    u
UC       C UC  C        gucc 


Annotation confidence High
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Genome context
AGTA03000061.1: 1646812-1646869 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-449a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-449a-5p

Accession MIMAT0042448
Description Metriaclima zebra mze-miR-449a-5p mature miRNA
Sequence 1 - AGGCAGUGUCUUGUUAGCUGGU - 22
Evidence experimental
Illumina [1]

Mature mze-miR-449a-3p

Accession MIMAT0060066
Description Metriaclima zebra mze-miR-449a-3p mature miRNA
Sequence 38 - CAGCUCACCUGCUGCUGCCCU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381