Stem-loop nbr-mir-10a-2

Accession

MI0034273

Description

Neolamprologus brichardi nbr-mir-10a-2 precursor miRNA

Sequence

1778122 reads, 109938.0 reads per million, 7 experiments

UACCCUGUAGAACCGAAUUUGUgugaaguacaagcagucgCAAAUACGUCUCUACAGGAAUA
...((((((((..((.(((((((....((....))...))))))).))..))))))))....

Structure

-UAC        AC  A       ugaa  a 
    CCUGUAGA  CG AUUUGUg    gu c
    ||||||||  || |||||||    ||  
    GGACAUCU  GC UAAACgc    cg a
AUAA        CU  A       -uga  a 

Annotation confidence High

Genome context

JH422281.1: 11725732-11725793 [+]

Mature nbr-miR-10a-5p

• Accession: MIMAT0042465
• Description: Neolamprologus brichardi nbr-miR-10a-5p mature miRNA
• Sequence: 1 - UACCCUGUAGAACCGAAUUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-10a-2-3p

• Accession: MIMAT0060077
• Description: Neolamprologus brichardi nbr-miR-10a-2-3p mature miRNA
• Sequence: 41 - CAAAUACGUCUCUACAGGAAUA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381