Stem-loop nbr-mir-183-2

Accession

MI0034275

Description

Neolamprologus brichardi nbr-mir-183-2 precursor miRNA

Sequence

321521 reads, 20176.0 reads per million, 7 experiments

UAUGGCACUGGUAGAAUUCACUGugagagcucacuaucagUGAAUUACCAUAGGGCCAUAAa
((((((..(((((..((((((((..((......))..)))))))))))))....))))))..

Structure

--      --AC     GA        ug  ag 
  UAUGGC    UGGUA  AUUCACUG  ag  c
  ||||||    |||||  ||||||||  ||   
  AUACCG    ACCAU  UAAGUgac  uc  u
aA      GGAU     --        ua  ac 

Annotation confidence High

Genome context

JH422274.1: 7271175-7271236 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-183-2

Mature nbr-miR-183-5p

• Accession: MIMAT0042467
• Description: Neolamprologus brichardi nbr-miR-183-5p mature miRNA
• Sequence: 1 - UAUGGCACUGGUAGAAUUCACUG - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-183-3p

• Accession: MIMAT0060079
• Description: Neolamprologus brichardi nbr-miR-183-3p mature miRNA
• Sequence: 41 - UGAAUUACCAUAGGGCCAUAA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381