miRBase entry: nbr-mir-183-2

Stem-loop nbr-mir-183-2

Accession

MI0034275

Description

Neolamprologus brichardi nbr-mir-183-2 precursor miRNA

Sequence

UAUGGCACUGGUAGAAUUCACUGugagagcucacuaucagugaauuaccauagggccauaaa
((((((..(((((..((((((((..((......))..)))))))))))))....))))))..

Structure

--      --AC     GA        ug  ag 
  UAUGGC    UGGUA  AUUCACUG  ag  c
  ||||||    |||||  ||||||||  ||   
  auaccg    accau  uaagugac  uc  u
aa      ggau     --        ua  ac

Annotation confidence Not enough data

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Genome context

JH422274.1: 7271175-7271236 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-183-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-183

Accession	MIMAT0042467
Description	Neolamprologus brichardi nbr-miR-183 mature miRNA
Sequence	1 - UAUGGCACUGGUAGAAUUCACUG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381