Stem-loop nbr-mir-9-1

Accession

MI0034279

Description

Neolamprologus brichardi nbr-mir-9-1 precursor miRNA

Sequence

1821807 reads, 93026.0 reads per million, 7 experiments

UCUUUGGUUAUCUAGCUGUAUGaguuuauguaauaucaUAAAGCUAGAGAACCGAAUGUA
..(((((((.(((((((.(((((..((....))..))))).))))))).)))))))....

Structure

--UC       A       G     gu  a 
    UUUGGUU UCUAGCU UAUGa  uu u
    ||||||| ||||||| |||||  ||  
    AAGCCAA AGAUCGA AUacu  aa g
AUGU       G       A     au  u 

Annotation confidence High

Genome context

JH422344.1: 496657-496716 [+]

Mature nbr-miR-9-5p

• Accession: MIMAT0042470
• Description: Neolamprologus brichardi nbr-miR-9-5p mature miRNA
• Sequence: 1 - UCUUUGGUUAUCUAGCUGUAUG - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-9-1-3p

• Accession: MIMAT0060082
• Description: Neolamprologus brichardi nbr-miR-9-1-3p mature miRNA
• Sequence: 39 - UAAAGCUAGAGAACCGAAUGUA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381