Stem-loop nbr-mir-199-1

Accession

MI0034292

Description

Neolamprologus brichardi nbr-mir-199-1 precursor miRNA

Sequence

531341 reads, 29904.0 reads per million, 7 experiments

CCCAGUGUUCAGACUACCUGUUCAGgaucuuacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((((((.......))))...))))))))))).)))))))..

Structure

-C       U        C   ---    ga 
  CCAGUGU CAGACUAC UGU   UCAG  u
  ||||||| |||||||| |||   ||||  c
  GGUUACA GUCUGAUG ACA   gguc  u
UU       C        -   ugu    au 

Annotation confidence High

Genome context

JH422290.1: 764737-764796 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-199-1

Mature nbr-miR-199-5p

• Accession: MIMAT0060092
• Description: Neolamprologus brichardi nbr-miR-199-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUUCAG - 25
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-199-3p

• Accession: MIMAT0042474
• Description: Neolamprologus brichardi nbr-miR-199-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381