Stem-loop nbr-mir-140

Accession

MI0034303

Description

Neolamprologus brichardi nbr-mir-140 precursor miRNA

Sequence

42196 reads, 2529.0 reads per million, 7 experiments

CAGUGGUUUUACCCUAUGGUAGgugacaucaugcuguucuACCACAGGGUAGAACCACGGACG
..(((((((((((((.((((((..((((......)))))))))).))))))))))))).....

Structure

---CA             A      gu    uc 
     GUGGUUUUACCCU UGGUAG  gaca  a
     ||||||||||||| ||||||  ||||   
     CACCAAGAUGGGA ACCAuc  uugu  u
GCAGG             C      --    cg 

Annotation confidence High

Genome context

JH422933.1: 41449-41511 [-]

Mature nbr-miR-140-5p

• Accession: MIMAT0060102
• Description: Neolamprologus brichardi nbr-miR-140-5p mature miRNA
• Sequence: 1 - CAGUGGUUUUACCCUAUGGUAG - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-140-3p

• Accession: MIMAT0042480
• Description: Neolamprologus brichardi nbr-miR-140-3p mature miRNA
• Sequence: 41 - ACCACAGGGUAGAACCACGGACG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381