Stem-loop nbr-mir-25

Accession

MI0034306

Description

Neolamprologus brichardi nbr-mir-25 precursor miRNA

Sequence

498785 reads, 27138.0 reads per million, 7 experiments

AGGCGGAGACUUGGGCAAUUGCcgggcaucccagagggCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.(((((.((((((...)))....)))))))).)..))))).))))..

Structure

--    G     UU G     U   ----   c 
  AGGC GAGAC  G GCAAU GCc    ggg  
  |||| |||||  | ||||| |||    ||| a
  UCUG CUCUG  C CGUUA Cgg    ccc  
AG    G     UU A     -   gaga   u 

Annotation confidence High

Genome context

JH422530.1: 66949-67008 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-25

Mature nbr-miR-25-5p

• Accession: MIMAT0060105
• Description: Neolamprologus brichardi nbr-miR-25-5p mature miRNA
• Sequence: 1 - AGGCGGAGACUUGGGCAAUUGC - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-25-3p

• Accession: MIMAT0042482
• Description: Neolamprologus brichardi nbr-miR-25-3p mature miRNA
• Sequence: 39 - CAUUGCACUUGUCUCGGUCUGA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381