Stem-loop nbr-let-7a-2

Accession

MI0034307

Description

Neolamprologus brichardi nbr-let-7a-2 precursor miRNA

Sequence

90691 reads, 5172.0 reads per million, 7 experiments

UGAGGUAGUAGGUUGUAUAGUUuuagggucguacccuuccugucagauaacUAUACAACUUACUGUCUUUCCU
.(((((((((((((((((((((..(((((...)))))...........)))))))))))))))))))))....

Structure

---U                     ---------uu     c 
    GAGGUAGUAGGUUGUAUAGUU           agggu  
    |||||||||||||||||||||           ||||| g
    UUCUGUCAUUCAACAUAUcaa           uccca  
UCCU                     uagacuguccu     u 

Annotation confidence Medium

Genome context

JH422276.1: 12827841-12827913 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-let-7a-2

Mature nbr-let-7a-5p

• Accession: MIMAT0042483
• Description: Neolamprologus brichardi nbr-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-let-7a-2-3p

• Accession: MIMAT0060106
• Description: Neolamprologus brichardi nbr-let-7a-2-3p mature miRNA
• Sequence: 52 - UAUACAACUUACUGUCUUUCCU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381