Stem-loop nbr-let-7a-1

Accession

MI0034312

Description

Neolamprologus brichardi nbr-let-7a-1 precursor miRNA

Sequence

83078 reads, 4676.0 reads per million, 7 experiments

UGAGGUAGUAGGUUGUAUAGUUgagaauuacaccccgggagauaaCUGUACAACCUCCUAGCUUUCC
.(((.(((.((((((((((((((...................)))))))))))))).))).)))...

Structure

--U   G   U              agaauuac 
   GAG UAG AGGUUGUAUAGUUg        a
   ||| ||| ||||||||||||||        c
   UUC AUC UCCAACAUGUCaau        c
CCU   G   C              agagggcc 

Annotation confidence High

Genome context

JH422335.1: 3460055-3460121 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from nbr-let-7a-1

Mature nbr-let-7a-5p

• Accession: MIMAT0042483
• Description: Neolamprologus brichardi nbr-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-let-7a-1-3p

• Accession: MIMAT0060107
• Description: Neolamprologus brichardi nbr-let-7a-1-3p mature miRNA
• Sequence: 46 - CUGUACAACCUCCUAGCUUUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381