Stem-loop nbr-mir-462

Accession

MI0034317

Description

Neolamprologus brichardi nbr-mir-462 precursor miRNA

Literature search

1 open access papers mention nbr-mir-462
(1 sentences)

Sequence

8824 reads, 555.0 reads per million, 7 experiments

UAACGGAACCCAUAAUGCAGCUGugauucugagccccaGCUGGUUAUGGGGUCCGUUUCc
.((((((.((((((((.((((((.(..........))))))))))))))).))))))...

Structure

--U      A        G      u auuc 
   AACGGA CCCAUAAU CAGCUG g    u
   |||||| |||||||| |||||| |     
   UUGCCU GGGUAUUG GUCGac c    g
cCU      G        -      - ccga 

Annotation confidence High

Genome context

JH422281.1: 5151564-5151623 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-462

Mature nbr-miR-462-5p

• Accession: MIMAT0042487
• Description: Neolamprologus brichardi nbr-miR-462-5p mature miRNA
• Sequence: 1 - UAACGGAACCCAUAAUGCAGCUG - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-462-3p

• Accession: MIMAT0060116
• Description: Neolamprologus brichardi nbr-miR-462-3p mature miRNA
• Sequence: 39 - GCUGGUUAUGGGGUCCGUUUC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381