Stem-loop nbr-mir-2188

Accession

MI0034318

Description

Neolamprologus brichardi nbr-mir-2188 precursor miRNA

Sequence

42303 reads, 2514.0 reads per million, 7 experiments

AAGGUCCAACCUCACAUGUCCUgugcggcugaaggaagGCUGUGUGAGGUCAGACCUAUC
.(((((..((((((((((.(((.(.(.......).)))).))))))))))..)))))...

Structure

--A     CA          U   g g gg 
   AGGUC  ACCUCACAUG CCU u c  c
   |||||  |||||||||| ||| | |  u
   UCCAG  UGGAGUGUGU Gga a g  g
CUA     AC          C   - g aa 

Annotation confidence High

Genome context

JH422279.1: 5370977-5371036 [-]

Mature nbr-miR-2188-5p

• Accession: MIMAT0042488
• Description: Neolamprologus brichardi nbr-miR-2188-5p mature miRNA
• Sequence: 1 - AAGGUCCAACCUCACAUGUCCU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-2188-3p

• Accession: MIMAT0060117
• Description: Neolamprologus brichardi nbr-miR-2188-3p mature miRNA
• Sequence: 39 - GCUGUGUGAGGUCAGACCUAUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381