Stem-loop nbr-mir-221-1

Accession

MI0034327

Description

Neolamprologus brichardi nbr-mir-221-1 precursor miRNA

Sequence

33352 reads, 1885.0 reads per million, 7 experiments

ACCUGGCAUACAAUGUAGAUUUCUGUgugguucaauucuacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....(((((.((......)))))))))))))))).))))))))...

Structure

---        U         AUUU     u  uu 
   ACCUGGCA ACAAUGUAG    CUGUg gg  c
   |||||||| |||||||||    ||||| ||   
   UGGGUCGU UGUUACAUC    GAcau cu  a
CUU        C         ----     -  ua 

Annotation confidence High

Genome context

JH422422.1: 575674-575737 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-221-1

Mature nbr-miR-221-1-5p

• Accession: MIMAT0060124
• Description: Neolamprologus brichardi nbr-miR-221-1-5p mature miRNA
• Sequence: 1 - ACCUGGCAUACAAUGUAGAUUUCUGU - 26
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-221-3p

• Accession: MIMAT0042495
• Description: Neolamprologus brichardi nbr-miR-221-3p mature miRNA
• Sequence: 42 - AGCUACAUUGUCUGCUGGGUUUC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381