Stem-loop nbr-mir-30c

Accession

MI0034328

Description

Neolamprologus brichardi nbr-mir-30c precursor miRNA

Sequence

89903 reads, 5173.0 reads per million, 7 experiments

UGUAAACAUCCUACACUCUCGGCaucugcccucugguggCCGGGAGUGGGACUGUUUGCACU
(((((((((((..(((((((((((((........))).))))))))))))).))))))))..

Structure

--        -   UA          -   ugc 
  UGUAAACA UCC  CACUCUCGGC auc   c
  |||||||| |||  |||||||||| |||    
  ACGUUUGU AGG  GUGAGGGCCg ugg   c
UC        C   --          g   ucu 

Annotation confidence High

Genome context

JH422483.1: 674619-674680 [-]

Mature nbr-miR-30c-5p

• Accession: MIMAT0042496
• Description: Neolamprologus brichardi nbr-miR-30c-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCUCGGC - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-30c-3p

• Accession: MIMAT0060126
• Description: Neolamprologus brichardi nbr-miR-30c-3p mature miRNA
• Sequence: 40 - CCGGGAGUGGGACUGUUUGCACU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381