miRBase entry: nbr-let-7d-1

Stem-loop nbr-let-7d-1

Accession

MI0034333

Description

Neolamprologus brichardi nbr-let-7d-1 precursor miRNA

Sequence

UGAGGUAGUUGGUUGUAUGGUUucgcauaauaaacagcauggagauaacuguacaaccuucuagcuuucc
.(((.(((..((((((((((((((.(((..........)))..)).))))))))))))..))).)))...

Structure

--U   G   UU            -  -g   aaua 
   GAG UAG  GGUUGUAUGGUU uc  cau    a
   ||| |||  |||||||||||| ||  |||     
   uuc auc  ccaacaugucaa ag  gua    a
ccu   g   uu            u  ag   cgac

Annotation confidence Not enough data

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Genome context

JH422307.1: 159119-159188 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-let-7d-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-let-7d

Accession	MIMAT0042500
Description	Neolamprologus brichardi nbr-let-7d mature miRNA
Sequence	1 - UGAGGUAGUUGGUUGUAUGGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381