Stem-loop nbr-mir-30b

Accession

MI0034343

Description

Neolamprologus brichardi nbr-mir-30b precursor miRNA

Sequence

93799 reads, 5103.0 reads per million, 7 experiments

UGUAAACAUCCUACACUCUCAGCUguguugucauggagCUGGGAGAGGGGUGUUUACGCU
.(((((((((((...(((((((((.(((....))).))))))))).)))))))))))...

Structure

--U           ACA         g   u 
   GUAAACAUCCU   CUCUCAGCU ugu g
   |||||||||||   ||||||||| |||  
   CAUUUGUGGGG   GAGGGUCga gua u
UCG           --A         g   c 

Annotation confidence High

Genome context

JH422285.1: 4404735-4404794 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-30b

Mature nbr-miR-30b-5p

• Accession: MIMAT0042507
• Description: Neolamprologus brichardi nbr-miR-30b-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCUCAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-30b-3p

• Accession: MIMAT0060141
• Description: Neolamprologus brichardi nbr-miR-30b-3p mature miRNA
• Sequence: 39 - CUGGGAGAGGGGUGUUUACGCU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381