miRBase entry: nbr-mir-133b

Stem-loop nbr-mir-133b


Accession
MI0034353
Description
Neolamprologus brichardi nbr-mir-133b precursor miRNA


Sequence

12704 reads, 799.0 reads per million, 7 experiments
GCUGGUCAAACGGAACCAAGUCAGguguuucugugaggUUUGGUCCCCUUCAACCAGCU
((((((..((.((.(((((((((.(......).)))..)))))).)).))..)))))).

Structure
-      CA  C  A      --   G ug 
 GCUGGU  AA GG ACCAAG  UCA g  u
 ||||||  || || ||||||  ||| |   
 CGACCA  UU CC UGGUUU  agu u  u
U      AC  C  C      gg   g cu 


Annotation confidence High
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Genome context
JH422321.1: 2411895-2411953 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-mir-133b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-133b-5p

Accession MIMAT0060148
Description Neolamprologus brichardi nbr-miR-133b-5p mature miRNA
Sequence 1 - GCUGGUCAAACGGAACCAAGUCAG - 24
Evidence experimental
Illumina [1]

Mature nbr-miR-133b-3p

Accession MIMAT0042514
Description Neolamprologus brichardi nbr-miR-133b-3p mature miRNA
Sequence 39 - UUUGGUCCCCUUCAACCAGCU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381