miRBase entry: nbr-mir-133b

Stem-loop nbr-mir-133b

Accession

MI0034353

Description

Neolamprologus brichardi nbr-mir-133b precursor miRNA

Sequence

gcuggucaaacggaaccaagucagguguuucugugaggUUUGGUCCCCUUCAACCAGCU
((((((..((.((.(((((((((.(......).)))..)))))).)).))..)))))).

Structure

-      ca  c  a      --   g ug 
 gcuggu  aa gg accaag  uca g  u
 ||||||  || || ||||||  ||| |   
 CGACCA  UU CC UGGUUU  agu u  u
U      AC  C  C      gg   g cu

Annotation confidence Not enough data

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Genome context

JH422321.1: 2411895-2411953 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-133b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-133b

Accession	MIMAT0042514
Description	Neolamprologus brichardi nbr-miR-133b mature miRNA
Sequence	39 - UUUGGUCCCCUUCAACCAGCU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381