Stem-loop nbr-let-7i-2

Accession

MI0034355

Description

Neolamprologus brichardi nbr-let-7i-2 precursor miRNA

Sequence

30459 reads, 1678.0 reads per million, 7 experiments

UGAGGUAGUAGUUUGUGCUGUUggucggguugucauauuaccccuugcggagaugaCUGCGCAAUCUACUGCCUUGCc
.((((((((((.(((((((.((.((.((((.........))))...)).)).).....)))))).))))))))))...

Structure

--U          U      ----- G  g  --c    ugu 
   GAGGUAGUAG UUGUGC     U UU gu   gggu   c
   |||||||||| ||||||     | || ||   ||||   a
   UUCCGUCAUC AACGCG     a ag cg   ccca   u
cCG          U      UCagu g  g  uuc    uua 

Annotation confidence High

Genome context

JH422274.1: 2552855-2552932 [-]

Mature nbr-let-7i-5p

• Accession: MIMAT0042515
• Description: Neolamprologus brichardi nbr-let-7i-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGUUUGUGCUGUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-let-7i-2-3p

• Accession: MIMAT0060149
• Description: Neolamprologus brichardi nbr-let-7i-2-3p mature miRNA
• Sequence: 57 - CUGCGCAAUCUACUGCCUUGC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381