Stem-loop nbr-mir-200b

Accession

MI0034357

Description

Neolamprologus brichardi nbr-mir-200b precursor miRNA

Literature search

1 open access papers mention nbr-mir-200b
(2 sentences)

Sequence

63859 reads, 3617.0 reads per million, 7 experiments

CAUCUUACGAGGCAGCAUUGGAuaucaucacuuucucUAAUACUGCCUGGUAAUGAUGAU
((((((((.((((((.((((((.............)))))).)))))).)))).))))..

Structure

--    -    G      C      uauca 
  CAUC UUAC AGGCAG AUUGGA     u
  |||| |||| |||||| ||||||     c
  GUAG AAUG UCCGUC UAAUcu     a
UA    U    G      A      cuuuc 

Annotation confidence High

Genome context

JH422281.1: 3416234-3416293 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-200b

Mature nbr-miR-200b-5p

• Accession: MIMAT0060152
• Description: Neolamprologus brichardi nbr-miR-200b-5p mature miRNA
• Sequence: 1 - CAUCUUACGAGGCAGCAUUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-200b-3p

• Accession: MIMAT0042517
• Description: Neolamprologus brichardi nbr-miR-200b-3p mature miRNA
• Sequence: 38 - UAAUACUGCCUGGUAAUGAUGAU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381