Stem-loop nbr-mir-1388

Accession

MI0034361

Description

Neolamprologus brichardi nbr-mir-1388 precursor miRNA

Sequence

1819 reads, 116.0 reads per million, 7 experiments

AGGACUGUCCAACCUGAGAAUGgugauuauaggcucaAUCUCAGGUUCGUCAGCCCAUG
.((.(((.(.(((((((((.((((........)).)).))))))))).).))).))...

Structure

--A  A   U C         A  -  gau 
   GG CUG C AACCUGAGA UG gu   u
   || ||| | ||||||||| || ||    
   CC GAC G UUGGACUCU ac cg   a
GUA  C   U C         A  u  gau 

Annotation confidence High

Genome context

JH422317.1: 1005195-1005253 [+]

Mature nbr-miR-1388-5p

• Accession: MIMAT0042520
• Description: Neolamprologus brichardi nbr-miR-1388-5p mature miRNA
• Sequence: 1 - AGGACUGUCCAACCUGAGAAUG - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-1388-3p

• Accession: MIMAT0060154
• Description: Neolamprologus brichardi nbr-miR-1388-3p mature miRNA
• Sequence: 38 - AUCUCAGGUUCGUCAGCCCAUG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381