Stem-loop nbr-mir-30d

Accession

MI0034370

Description

Neolamprologus brichardi nbr-mir-30d precursor miRNA

Literature search

1 open access papers mention nbr-mir-30d
(3 sentences)

Sequence

20722 reads, 1152.0 reads per million, 7 experiments

UGUAAACAUCCUACACUCAGCUguuauugauugccacagaggCUGAGAGGAGGUUGUUUACUUG
.(((((((.(((...(((((((.....((.....))....)))))))...))).)))))))...

Structure

--U       U   ACA       guuau  a 
   GUAAACA CCU   CUCAGCU     ug u
   ||||||| |||   |||||||     || u
   CAUUUGU GGA   GAGUCgg     ac g
GUU       U   GGA       -agac  c 

Annotation confidence High

Genome context

JH422309.1: 4877834-4877897 [+]

Mature nbr-miR-30d-5p

• Accession: MIMAT0042527
• Description: Neolamprologus brichardi nbr-miR-30d-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCAGCU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-30d-3p

• Accession: MIMAT0060163
• Description: Neolamprologus brichardi nbr-miR-30d-3p mature miRNA
• Sequence: 43 - CUGAGAGGAGGUUGUUUACUUG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381