Stem-loop nbr-mir-138-1

Accession

MI0034372

Description

Neolamprologus brichardi nbr-mir-138-1 precursor miRNA

Sequence

1644 reads, 104.0 reads per million, 7 experiments

AGCUGGUGUUGUGAAUCAGGCCGaugacacacaccucuuauaacccgGCUAUUUCACAACACCAGGGU
..(((((((((((((...(((((......................)))))..)))))))))))))...

Structure

-AG             UCA     augacacaca 
   CUGGUGUUGUGAA   GGCCG          c
   |||||||||||||   |||||           
   GACCACAACACUU   UCGgc          c
UGG             -UA     ccaauauucu 

Annotation confidence High

Genome context

JH422313.1: 3486312-3486379 [-]

Mature nbr-miR-138-5p

• Accession: MIMAT0042529
• Description: Neolamprologus brichardi nbr-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-138-1-3p

• Accession: MIMAT0060166
• Description: Neolamprologus brichardi nbr-miR-138-1-3p mature miRNA
• Sequence: 48 - GCUAUUUCACAACACCAGGGU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381