Stem-loop nbr-mir-138-2

Accession

MI0034373

Description

Neolamprologus brichardi nbr-mir-138-2 precursor miRNA

Sequence

1435 reads, 91.0 reads per million, 7 experiments

AGCUGGUGUUGUGAAUCAGGCCGcugaaaugucacgcacgGCUUUUUCACAACACCAGGGU
..(((((((((((((..((((((((((....))).))..))))).)))))))))))))...

Structure

-AG             UC     --  -   a 
   CUGGUGUUGUGAA  AGGCC  Gc uga a
   |||||||||||||  |||||  || |||  
   GACCACAACACUU  UUCGg  cg acu u
UGG             -U     ca  c   g 

Annotation confidence High

Genome context

JH422314.1: 4448435-4448495 [+]

Mature nbr-miR-138-5p

• Accession: MIMAT0042529
• Description: Neolamprologus brichardi nbr-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-138-2-3p

• Accession: MIMAT0060167
• Description: Neolamprologus brichardi nbr-miR-138-2-3p mature miRNA
• Sequence: 41 - GCUUUUUCACAACACCAGGGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381