Stem-loop nbr-mir-142-1

Accession

MI0034376

Description

Neolamprologus brichardi nbr-mir-142-1 precursor miRNA

Sequence

982 reads, 64.0 reads per million, 7 experiments

CAUAAAGUAGAAAGCACUACUaaacuccucgccacaguguAGUGUUUCCUACUUUAUGGAUG
((((((((((.(((((((((..................))))))))).))))))))))....

Structure

----          A         Uaaacucc 
    CAUAAAGUAG AAGCACUAC        u
    |||||||||| |||||||||         
    GUAUUUCAUC UUUGUGAug        c
GUAG          C         ugacaccg 

Annotation confidence Medium

Genome context

JH422337.1: 3454888-3454949 [+]

Mature nbr-miR-142-5p

• Accession: MIMAT0042531
• Description: Neolamprologus brichardi nbr-miR-142-5p mature miRNA
• Sequence: 1 - CAUAAAGUAGAAAGCACUACU - 21
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-142-3p

• Accession: MIMAT0060170
• Description: Neolamprologus brichardi nbr-miR-142-3p mature miRNA
• Sequence: 41 - AGUGUUUCCUACUUUAUGGAUG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381