miRBase entry: nbr-let-7c

Stem-loop nbr-let-7c

Accession

MI0034378

Description

Neolamprologus brichardi nbr-let-7c precursor miRNA

Sequence

UGAGGUAGUAGGUUGUAUGGUUuagaauuacacccugggaguuaacuguacaaccuucuagcuuucc
.(((.(((.(((((((((((((...(((..(......)..)))))))))))))))).))).)))...

Structure

--U   G   U             uag   ua ac 
   GAG UAG AGGUUGUAUGGUU   aau  c  c
   ||| ||| |||||||||||||   |||  |   
   uuc auc uccaacaugucaa   uug  g  c
ccu   g   u             ---   ag gu

Annotation confidence Not enough data

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Genome context

JH422457.1: 315204-315270 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-let-7c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-let-7c

Accession	MIMAT0042532
Description	Neolamprologus brichardi nbr-let-7c mature miRNA
Sequence	1 - UGAGGUAGUAGGUUGUAUGGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381