Stem-loop nbr-mir-27e-1

Accession

MI0034387

Description

Neolamprologus brichardi nbr-mir-27e-1 precursor miRNA

Sequence

24621 reads, 1372.0 reads per million, 7 experiments

agagcuuagcuaauuggugagcauugaucccugcuauguguugUUCACAGUGGCUAAGUUCAGU
.(((((((((((....(((((((..................)))))))..)))))))))))...

Structure

--a           auug       uugauccc 
   gagcuuagcua    gugagca        u
   |||||||||||    |||||||         
   CUUGAAUCGGU    CACUUgu        g
UGA           --GA       uguguauc 

Annotation confidence Not enough data

Genome context

JH422373.1: 1151078-1151141 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-27e-1

Mature nbr-miR-27e-3p

• Accession: MIMAT0042540
• Description: Neolamprologus brichardi nbr-miR-27e-3p mature miRNA
• Sequence: 44 - UUCACAGUGGCUAAGUUCAGU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381