miRBase entry: nbr-mir-27e-1

Stem-loop nbr-mir-27e-1

Accession

MI0034387

Description

Neolamprologus brichardi nbr-mir-27e-1 precursor miRNA

Sequence

agagcuuagcuaauuggugagcauugaucccugcuauguguugUUCACAGUGGCUAAGUUCAGU
.(((((((((((....(((((((..................)))))))..)))))))))))...

Structure

--a           auug       uugauccc 
   gagcuuagcua    gugagca        u
   |||||||||||    |||||||         
   CUUGAAUCGGU    CACUUgu        g
UGA           --GA       uguguauc

Annotation confidence Not enough data

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Genome context

JH422373.1: 1151078-1151141 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-27e-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-27e

Accession	MIMAT0042540
Description	Neolamprologus brichardi nbr-miR-27e mature miRNA
Sequence	44 - UUCACAGUGGCUAAGUUCAGU - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381