Stem-loop nbr-mir-338-1

Accession

MI0034393

Description

Neolamprologus brichardi nbr-mir-338-1 precursor miRNA

Sequence

2377 reads, 141.0 reads per million, 7 experiments

AACAACAUCCUGGUGCUGCCUGAGUaguugucacaaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((...........))))))))))))).))).))))).

Structure

-     C   -         CCU    aguu 
 AACAA AUC CUGGUGCUG   GAGU    g
 ||||| ||| |||||||||   ||||    u
 UUGUU UAG GACUACGAC   CUca    c
G     U   U         ---    aaca 

Annotation confidence High

Genome context

JH422293.1: 1365695-1365754 [-]

Mature nbr-miR-338-1-5p

• Accession: MIMAT0060179
• Description: Neolamprologus brichardi nbr-miR-338-1-5p mature miRNA
• Sequence: 1 - AACAACAUCCUGGUGCUGCCUGAGU - 25
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-338-3p

• Accession: MIMAT0042544
• Description: Neolamprologus brichardi nbr-miR-338-3p mature miRNA
• Sequence: 39 - UCCAGCAUCAGUGAUUUUGUUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381