Stem-loop nbr-mir-338-2

Accession

MI0034395

Description

Neolamprologus brichardi nbr-mir-338-2 precursor miRNA

Sequence

598 reads, 39.0 reads per million, 7 experiments

AACAACAUCCUGAUGCUGUCUGGGUguguaaagcagaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((.(((...)))..))))))))))))).))).))))).

Structure

-     C   -         UCU    -g   a 
 AACAA AUC CUGAUGCUG   GGGU  ugu  
 ||||| ||| |||||||||   ||||  ||| a
 UUGUU UAG GACUACGAC   CUca  acg  
G     U   U         ---    ag   a 

Annotation confidence Not enough data

Genome context

JH422349.1: 1082552-1082612 [-]

Mature nbr-miR-338-2-5p

• Accession: MIMAT0060180
• Description: Neolamprologus brichardi nbr-miR-338-2-5p mature miRNA
• Sequence: 1 - AACAACAUCCUGAUGCUGUCUGGGU - 25
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-338-3p

• Accession: MIMAT0042544
• Description: Neolamprologus brichardi nbr-miR-338-3p mature miRNA
• Sequence: 40 - UCCAGCAUCAGUGAUUUUGUUG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381